#Genodive manual software

Įvanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. A case study in cherimoya ( Annona cherimola, Annonaceae), an underutilised subtropical fruit tree species. Įscribano P, Viruel M, Hormaza J (2008) Comparison of different methods to construct a core germplasm collection in woody perennial species with simple sequence repeat markers. Bull SAJA 141:69–71Įarl DA, vonHoldt BM (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. ĭupouy J (1959) Le prunier de Briançon ou Marmottier ( Prunus brigantiaca Vill.) et les huiles de marmotte. ĭoyle JJ (1992) Gene trees and species trees: molecular systematics as one-character taxonomy. OUP USA,ĭecroocq S, Cornille A, Tricon D, Babayeva S, Chague A, Eyquard JP, Karychev R, Dolgikh S, Kostritsyna T, Liu S, Liu W, Geng W, Liao K, Asma BM, Akparov Z, Giraud T, Decroocq V (2016) New insights into the history of domesticated and wild apricots and its contribution to Plum pox virus resistance. Collection L’encyclopédie des plantes sauvages comestibles et toxiques de l'Europe.Ĭoyne JA, Orr HA (2004) Speciation. Ĭouplan F (2009) Le régal végétal: plantes sauvages comestibles. Ĭornille A, Gladieux P, Giraud T (2013b) Crop-to-wild gene flow and spatial genetic structure in the closest wild relatives of the cultivated apple. Ĭornille A, Giraud T, Bellard C, Tellier A, le Cam B, Smulders MJM, Kleinschmit J, Roldan-Ruiz I, Gladieux P (2013a) Postglacial recolonization history of the European crabapple ( Malus sylvestris Mill.), a wild contributor to the domesticated apple. Ĭici S, Van Acker R (2010) Gene flow in Prunus species in the context of novel trait risk assessment. Ĭhin S-W, Shaw J, Haberle R, Wen J, Potter D (2014) Diversification of almonds, peaches, plums and cherries – molecular systematics and biogeographic history of Prunus (Rosaceae). Wiley-Blackwell Ltd, Hobokenīranca F, Donnini D (2011) Prunus brigantina. brigantina within the Armeniaca section it also illustrates the importance of the sampling size and design in phylogenetic studies.Īllendorf FW, Luikart GH, Aitken SN (2012) Conservation and the genetics of populations, 2nd Edition edn. Our results thus confirm the classification of P. brigantina closer to the Armeniaca section than to the Prunus section. Similar to previous studies, dendrograms and networks placed P. armeniaca cultivars nor with diploid plums. cerasifera) genotyped with the same markers, we detected gene flow neither with European P. Using a dataset of cultivated apricots and wild cherry plums ( P. Based on genetic diversity and population structure analyses, a subset of 36 accessions were selected for ex situ conservation in a core collection that encompasses the whole detected P.

brigantina and a Bayesian model–based clustering approach revealed the existence of three genetically differentiated clusters, endemic to three geographical regions in the Alps, which will be important for in situ conservation measures. We detected a moderate genetic diversity in P. brigantina with other species in the Prunophora subgenus, encompassing the Prunus (Eurasian plums), Prunocerasus (North American plums) and Armeniaca (apricots) sections, to check its current taxonomy. We also examined the genetic relationships of P.

brigantina samples with 24 nuclear simple sequence repeat (microsatellite) markers and studied their genetic diversity and population structure, with the aim to inform in situ conservation measures and build a core collection for long-term ex situ conservation. across its natural distribution in the French Alps, where its populations are severely fragmented and its population size strongly impacted by humans. In this study, we sampled the Alpine plum (Briançon apricot) Prunus brigantina Vill. In-depth characterization of the genetic diversity and population structure of wild relatives is of paramount importance for genetic improvement and biodiversity conservation, and is particularly crucial when the wild relatives of crops are endangered.